2022 ANNUAL REPORT

97 • Gabriel Azhari, Shamam Waldman, Netanel Ofer, Yosi Keller, Shai Carmi, Gur Yaari. “Decomposition of Individual SNP Patterns from Mixed DNA Samples”. Available at SSRN 3737807, 2022. • Liat Stoler-Barak, Ethan Harris, Ayelet Peres, Hadas Hezroni, Mirela Kuka, Amalie Grenov, Neta Gurwicz, Meital Kupervaser, Bon Ham Yip, Matteo Iannacone, Gur Yaari, John Crispino, Ziv Shulman. “B cell class switch recombination is regulated by DYRK1A through MSH6 phosphorylation”. 2022. • Roei D Mazor, Nachum Nathan;Amit Gilboa, Liat Stoler-Barak, Lihee Moss, Inna Solomonov, Assaf Hanuna, Yalin Divinsky, Merav D Shmueli, Hadas Hezroni, Irina Zaretsky, Michael Mor, Ofra Golani, Gad Sabah, Ariella Jakobson-Setton, Natalia Yanichkin, Meora Feinmesser, Daliah Tsoref, Lina Salman, Effi Yeoshoua, Eyal Peretz, Inna Erlich, Netta Mendelson Cohen, Jonathan M Gershoni, Natalia Freund, Yifat Merbl, Gur Yaari, Ram Eitan, Irit Sagi, Ziv Shulman. “Tumor-reactive antibodies evolve from non-binding and autoreactive precursors”. Cell, 2022. • Ivana Mikocziova, Ayelet Peres, Moriah Gidoni, Victor Greiff, Gur Yaari, Ludvig M Sollid.” Germline polymorphisms and alternative splicing of human immunoglobulin light chain genes”. Iscience, 2021. • Liat Stoler Barak, Amalie Grenov, Hadas Hezroni Bravyi, Ayelet Peres, Gur Yaari, Ziv Shulman. “The role of DYRK1A in B cell immune responses”. WILEY, 2021. • Maria Chernigovskaya, Andrei Slabodkin, Milena Pavlovic, Lonneke Scheffer, Rahmad Akbar, Philippe Robert, Gur Yaari, Geir Kjetil Sandve, Victor Greiff. “Modular assembly of immune-eventlabeled synthetic AIRR-datasets for the development and benchmarking of AIRRbased machine learning”. WILEY, 2021. • Milena Pavlović, Lonneke Scheffer, Keshav Motwani;Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian LM Bernal;Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S Al Hajj, Gabriel Balaban, Todd M Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, PingHan Hsieh, Günter Klambauer, Marieke L Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut Rand, Enrico Riccardi, Philippe A Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov;Ludvig M Sollid, Dmytro Titov, Cédric R Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve. “The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires”. Nature Machine Intelligence, 2021. • Oz Pirvandy, Moti Fridman, Gur Yaari. “Gambling Strategies and Prize-Pricing Recommendation in Sports Multi-Bets”. Big Data and Cognitive Computing, 2021. • Itamar Kanter, Gur Yaari, Tomer Kalisky. “Applications of community detection algorithms to large biological datasets”. Deep Sequencing Data Analysis, 59-80, 2021. • Miri Ostrovsky-Berman, Boaz Frankel, Pazit Polak, Gur Yaari. “Immune2vec: Embedding B/T Cell Receptor Sequences in ℝN Using Natural Language Processing.” Frontiers in Immunology, 2021. • Andrew M Collins, Ayelet Peres, Martin M Corcoran, Corey T Watson, Gur Yaari, William D Lees, Mats Ohlin. “Commentary on Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: relevance in infectious diseases and vaccination studies in human populations”. Genes & Immunity, 2021. • Shelley Klompus, Sigal Leviatan, Thomas Vogl, Roei D Mazor, Iris N Kalka, Liat Stoler-Barak, Nachum Nathan, Ayelet Peres, Lihee Moss, Anastasia Godneva, Sharon Kagan Ben Tikva, Eilat Shinar, Hadas Cohen Dvashi, Ronen Gabizon, Nir London, Ron Diskin, Gur Yaari, Adina Weinberger, Ziv Shulman, Eran Segal. “Cross-reactive antibodies against human coronaviruses and the animal coronavirome suggest diagnostics for future zoonotic spillovers”. Science Immunology, 2021. • Kerui Peng, Yana Safonova, Mikhail Shugay, Alice B Popejoy, Oscar L Rodriguez, Felix Breden, Petter Brodin, Amanda M Burkhardt, Carlos Bustamante,Van-Mai Cao-Lormeau, Martin M Corcoran, Darragh Duffy, Macarena Fuentes-Guajardo, Ricardo Fujita, Victor Greiff, Vanessa D Jönsson, Xiao Liu, Lluis Quintana-Murci, Maura Rossetti,Jianming Xie, Gur Yaari, Wei Zhang, Malak S Abedalthagafi, Khalid O Adekoya, Rahaman A Ahmed, Wei-Chiao Chang, Clive Gray, Yusuke Nakamura, William D Lees, Purvesh Khatri, Houda Alachkar, Cathrine Scheepers, Corey T Watson, Gunilla B Karlsson Hedestam, Serghei Mangul. “Diversity in immunogenomics: the value and the challenge Diversity in immunogenomics: the value and the challenge”. Nature Methods, 2021. • Or Shemesh, Pazit Polak, Knut EA Lundin, Ludvig M Sollid, Gur Yaari. “Machine learning analysis of naïve B-cell receptor repertoires stratifies celiac disease patients and controls”. Frontiers in immunology, 2021. • Michael Mor, Michal Werbner, Joel Alter, Modi Safra, Elad Chomsky, Jamie C Lee, Smadar Hada-Neeman, Ksenia Polonsky, Cameron J Nowell, Alex E Clark, Anna Roitburd-Berman, Noam Ben-Shalom, Michal Navon, Dor Rafael, Hila Sharim, Evgeny Kiner, Eric R Griffis, Jonathan M Gershoni, Oren Kobiler, Sandra Lawrynowicz Leibel, Oren Zimhony, Aaron F Carlin, Gur Yaari, Moshe Dessau, Meital Gal-Tanamy, David Hagin, Ben A Croker, Natalia T Freund. “Multiclonal SARS-CoV-2 neutralization by antibodies isolated from severe COVID-19 convalescent donors”. PLoS pathogens, 2021. • Miri Gordin, Hagit Philip, Alona Zilberberg, Moriah Gidoni, Raanan Margalit, Christopher Clouser, Kristofor Adams, Francois Vigneault, Irun R Cohen, Gur Yaari, Sol Efroni. “Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans”. PLoS computational biology, 2021. Prof. Yeshurun Yosef ex-Rector Department of Physics Member of BINA Electro Magnetism & Spintronics Center Energy Center Research Areas • Condensed matter physics • Magnetism • Superconductivity Abstract Superconductivity in nano-structures Understanding superconductivity in the nano-scale is of both fundamental interest and practical importance. The fundamental interest aims at understanding many novel phenomena manifested by nano-scale superconductors and not seen in the bulk. The practical importance stems from the potential of nano-superconducting structures to be used in innovative devices and systems including quantum computers. During the last decade we concentrated

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